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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
DNase-seq
3
ChIP-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
7
DNA accessibility
3
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
10
bam
5
bed narrowPeak
5
bigWig
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
tsv
1
hic
1
tar
Organism
13
Homo sapiens
Biosample type
74
tissue
23
cell line
13
primary cell
8
in vitro differentiated cells
Organ
12
epithelium
6
blood vessel
6
vasculature
6
vein
5
kidney
1
liver
Project
13
AMP
Genome assembly (visualization)
8
hg19
6
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
BIOSAMPLE
ASSAY
13 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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