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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
ATAC-seq
2
DNase-seq
2
total RNA-seq
1
Hi-C
Assay category
14
DNA binding
4
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
7
broad histone mark
4
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
31
bam
23
bigWig
21
bed narrowPeak
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
21
Homo sapiens
Biosample type
195
tissue
22
cell line
21
primary cell
6
in vitro differentiated cells
Organ
20
epithelium
11
kidney
8
blood vessel
8
vasculature
8
vein
1
liver
Project
21
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
primary cell
endothelial cell of umbilical vein
7
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
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