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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
4
Hi-C
2
ChIP-seq
Assay category
7
DNA accessibility
4
3D chromatin structure
2
DNA binding
Target of assay
2
broad histone mark
2
histone
2
histone modification
Date released
187
June, 2019
64
November, 2017
15
August, 2017
13
October, 2019
10
March, 2020
9
November, 2018
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
1
November, 2020
Available data
250
bam
207
bigWig
189
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
5
primary cell
5
tissue
2
in vitro differentiated cells
1
cell line
Organ
7
blood vessel
7
vasculature
5
epithelium
5
vein
4
limb
2
artery
2
nerve
1
heart
1
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
13 results
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DNase-seq
Hi-C
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
1
2
tissue
tibial artery
2
tibial nerve
2
heart
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
Panc1
1
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