Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
23
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
12
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
3
nucleotide modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
29
bam
20
bigWig
15
bed narrowPeak
8
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
36
Homo sapiens
Biosample type
246
tissue
40
primary cell
36
cell line
8
in vitro differentiated cells
Organ
21
pancreas
15
kidney
8
epithelium
Project
36
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
30
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
19
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
36 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
13
1
1
EndoC_BH1
6
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
+ See 1 more…
See all biosamples
Download