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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
ATAC-seq
5
DNase-seq
3
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
14
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
32
bam
32
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
7
fastq
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
42
Homo sapiens
Biosample type
40
primary cell
2
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
epithelium
42
nerve
30
kidney
26
artery
25
pancreas
21
eye
21
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
35
AMP
7
HPAP
Genome assembly (visualization)
30
GRCh38
27
hg19
Lab
35
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic alpha cell
5
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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cell line
glomerular visceral epithelial cell
1
1
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