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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
6
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
28
DNA binding
6
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
13
histone
13
histone modification
8
control
7
broad histone mark
7
recombinant protein
7
transcription factor
6
narrow histone mark
Date released
130
August, 2021
47
September, 2023
37
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
5
April, 2019
3
December, 2019
3
March, 2020
1
June, 2019
1
May, 2019
Available data
48
bam
37
bigWig
29
bed narrowPeak
bigBed narrowPeak
6
tsv
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
37
Homo sapiens
Biosample type
19
primary cell
14
cell line
4
tissue
Organ
86
brain
29
kidney
23
limb
21
epithelium
21
eye
16
nerve
14
blood vessel
14
vasculature
11
pancreas
8
heart
8
vein
7
liver
6
artery
4
gonad
4
ovary
2
pituitary gland
1
connective tissue
1
lymph node
1
skin of body
Project
37
AMP
Genome assembly (visualization)
24
hg19
21
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
audit script error
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
primary cell
endothelial cell of umbilical vein
7
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
tissue
kidney
4
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