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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
5
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
12
DNA binding
7
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
52
February, 2023
51
September, 2018
33
April, 2018
33
July, 2018
32
February, 2021
26
May, 2021
23
August, 2017
23
October, 2019
20
June, 2019
19
September, 2020
13
July, 2019
12
December, 2017
10
November, 2019
7
August, 2020
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
August, 2021
5
September, 2017
3
August, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
June, 2018
Available data
20
bam
15
bigWig
13
bed narrowPeak
9
bigBed narrowPeak
3
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
hic
1
tar
Organism
23
Homo sapiens
Biosample type
21
primary cell
2
cell line
Organ
83
brain
39
limb
27
kidney
26
nerve
24
blood vessel
24
vasculature
23
epithelium
21
eye
14
pancreas
12
artery
12
vein
5
heart
4
connective tissue
4
gonad
4
liver
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
23
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
broad histone mark
month_released!
September, 2023
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
8
2
1
1
epithelial cell of proximal tubule
4
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
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