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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
16
total RNA-seq
7
ATAC-seq
4
Hi-C
1
MPRA
1
pCHi-C
Assay category
59
Transcription
7
DNA accessibility
4
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
46
fastq
19
zippedFastqFolder
6
bigWig
4
bam
4
bedpe bed3+
4
hic
3
cool
3
tsv
1
bed broadPeak
1
bedpe
1
txt
Organism
71
Homo sapiens
Biosample type
65
primary cell
5
tissue
1
cell line
1
in vitro differentiated cells
Organ
30
pancreas
25
epithelium
1
adipose tissue
1
connective tissue
Project
62
HPAP
10
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
62
Klaus Kaestner, Upenn
5
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
audit script error
BIOSAMPLE
ASSAY
72 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
MPRA
pCHi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
2
15
2
1
pancreatic beta cell
1
1
1
pancreatic acinar cell
1
1
tissue
islet of Langerhans
4
1
cell line
MIN6
1
in vitro differentiated cells
white fat cell
1
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