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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
3
Hi-C
Assay category
19
DNA binding
3
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
19
bam
19
fastq
16
bed narrowPeak
16
bigWig
14
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
22
Homo sapiens
Biosample type
19
in vitro differentiated cells
3
primary cell
Organ
63
liver
22
epithelium
13
embryo
3
pancreas
Project
19
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
Hi-C
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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