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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
48
single cell RNA-seq
10
MeRIP-seq
3
Hi-C
1
ATAC-seq
1
DNase-seq
1
MPRA
Assay category
172
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
170
bam
169
bigWig
168
tsv
50
fastq
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
187
Homo sapiens
Biosample type
124
tissue
57
primary cell
7
cell line
Organ
170
pancreas
42
epithelium
8
connective tissue
Project
185
AMP
3
HPAP
Genome assembly (visualization)
173
hg19
170
GRCh38
Lab
175
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
12
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
188 results
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Clear Filters
total RNA-seq
single cell RNA-seq
MeRIP-seq
Hi-C
ATAC-seq
DNase-seq
MPRA
tissue
islet of Langerhans
120
4
primary cell
pancreatic beta cell
9
1
pancreatic alpha cell
7
1
osteoblast
4
1
1
pancreatic acinar cell
5
1
pancreatic delta cell
4
+ See 11 more…
cell line
EndoC_BH1
6
MIN6
1
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