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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
32
pCHi-C
15
total RNA-seq
13
Hi-C
4
ATAC-seq
1
MPRA
Assay category
123
DNA binding
15
Transcription
13
3D chromatin structure
4
DNA accessibility
Target of assay
95
histone
95
histone modification
58
broad histone mark
37
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
136
bam
117
bigWig
100
bed narrowPeak
97
bigBed narrowPeak
45
tsv
15
bedpe bed3+
13
hic
3
cool
2
ibed
1
txt
Organism
187
Homo sapiens
Biosample type
155
tissue
12
cell line
9
primary cell
8
in vitro differentiated cells
4
stem cell
Organ
54
blood vessel
54
vasculature
30
brain
28
heart
19
pancreas
14
epithelium
12
musculature of body
7
kidney
7
limb
5
artery
3
liver
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
178
AMP
7
T1D
3
HPAP
Genome assembly (visualization)
132
hg19
112
GRCh38
Lab
185
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
MPRA
tissue
aorta
13
1
1
1
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 25 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
MIN6
1
RCC 7860 VHL
1
+ See 2 more…
primary cell
kidney epithelial cell
5
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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