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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
47
total RNA-seq
3
Hi-C
1
MPRA
1
pCHi-C
Assay category
100
DNA accessibility
47
Transcription
3
3D chromatin structure
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
90
bam
90
bigWig
46
tsv
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
151
Homo sapiens
Biosample type
tissue
150
primary cell
2
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
104
AMP
45
T1D
3
HPAP
Genome assembly (visualization)
93
hg19
45
GRCh38
Lab
104
AMP-T2D consortium
45
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
3
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ATAC-seq
total RNA-seq
Hi-C
MPRA
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
1
MIN6
1
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