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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
23
ChIP-seq
3
Hi-C
1
MPRA
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
23
DNA binding
3
3D chromatin structure
Target of assay
27
histone
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
256
bam
233
bigWig
189
tsv
23
tagAlign
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
317
Homo sapiens
Biosample type
166
tissue
150
primary cell
2
cell line
Organ
167
liver
3
epithelium
3
pancreas
Project
270
AMP
45
T1D
3
HPAP
Genome assembly (visualization)
236
hg19
188
GRCh38
Lab
270
AMP-T2D consortium
45
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
3
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
318 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
MPRA
pCHi-C
tissue
liver
143
23
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
1
MIN6
1
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