Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
34
single cell RNA-seq
22
snATAC-seq
6
total RNA-seq
3
Hi-C
1
MPRA
Assay category
61
DNA accessibility
41
DNA methylation
40
Transcription
3
3D chromatin structure
Date released
690
February, 2021
266
May, 2021
233
August, 2017
195
August, 2021
168
July, 2018
147
May, 2020
142
May, 2022
140
February, 2023
124
October, 2019
91
July, 2019
59
September, 2020
58
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
November, 2017
27
September, 2018
24
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
14
November, 2020
13
November, 2018
11
October, 2017
9
December, 2017
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
December, 2018
4
January, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
24
bam
24
fastq
bed narrowPeak
8
txt
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
Organism
145
Homo sapiens
Biosample type
137
primary cell
8
tissue
1
cell line
Organ
89
pancreas
83
epithelium
liver
2
musculature of body
Project
137
HPAP
9
AMP
Genome assembly (visualization)
4
hg19
Lab
137
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
3
AMP-T2D consortium
Audit category:
4
audit script error
organ_slims!
liver
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
146 results
search-icon
table-tab-icon
Clear Filters
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
Hi-C
MPRA
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
6
skeletal muscle tissue
1
1
cell line
MIN6
1
Download