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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
ATAC-seq
7
WGBS
3
Hi-C
1
FAIRE-seq
1
MPRA
Assay category
70
DNA binding
17
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
94
fastq
87
bam
87
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
97
Homo sapiens
Biosample type
62
cell line
26
tissue
10
primary cell
Organ
53
liver
17
pancreas
15
blood
15
bodily fluid
10
epithelium
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
88
AMP
10
HPAP
Genome assembly (visualization)
86
GRCh38
74
hg19
Lab
88
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
FAIRE-seq
MPRA
cell line
HepG2
45
1
GM12878
15
MIN6
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic alpha cell
5
1
pancreatic beta cell
2
1
pancreatic acinar cell
1
See all biosamples
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