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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
9
DNase-seq
7
ATAC-seq
6
WGBS
3
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
17
DNA accessibility
10
DNA binding
6
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
34
fastq
30
bigWig
26
bam
17
bed narrowPeak
17
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
1
csv
Organism
37
Homo sapiens
Biosample type
cell line
26
tissue
11
primary cell
Organ
17
pancreas
10
epithelium
9
spleen
7
liver
2
brain
1
adipose tissue
1
connective tissue
Project
27
AMP
10
HPAP
Genome assembly (visualization)
29
GRCh38
20
hg19
Lab
27
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic alpha cell
5
1
pancreatic beta cell
2
1
pancreatic acinar cell
1
pancreatic cell
1
See all biosamples
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