Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
9
DNase-seq
7
WGBS
5
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
single cell RNA-seq
Assay category
104
DNA binding
10
DNA accessibility
7
DNA methylation
5
3D chromatin structure
5
Transcription
Target of assay
92
transcription factor
23
RNA binding protein
16
recombinant protein
10
control
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
fastq
121
bam
110
bigWig
103
bed narrowPeak
103
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
1
csv
1
txt
Organism
127
Homo sapiens
Biosample type
92
cell line
33
tissue
5
primary cell
2
stem cell
Organ
54
liver
42
blood
42
bodily fluid
16
spleen
10
pancreas
3
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
124
AMP
4
community
3
HPAP
1
ITG
Genome assembly (visualization)
110
GRCh38
104
hg19
Lab
124
AMP-T2D consortium
4
Anna Gloyn, Oxford
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
3
audit script error
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
132 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
FAIRE-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
single cell RNA-seq
cell line
HepG2
45
1
1
GM12878
42
EndoC-BH1
1
1
MIN6
1
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic cell
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download