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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
11
ATAC-seq
9
DNase-seq
7
WGBS
4
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
MPRA
1
total RNA-seq
Assay category
70
DNA binding
21
DNA accessibility
7
DNA methylation
5
Transcription
3
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
fastq
87
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
1
csv
1
txt
Organism
106
Homo sapiens
Biosample type
62
cell line
41
tissue
4
primary cell
Organ
53
liver
15
blood
15
bodily fluid
14
kidney
10
pancreas
9
spleen
3
epithelium
2
adipose tissue
2
brain
2
connective tissue
Project
104
AMP
3
HPAP
Genome assembly (visualization)
91
GRCh38
75
hg19
Lab
90
AMP-T2D consortium
14
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
Hi-C
FAIRE-seq
MPRA
total RNA-seq
cell line
HepG2
45
1
GM12878
15
MIN6
1
tissue
kidney
11
3
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic cell
1
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