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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
5
ATAC-seq
3
Hi-C
2
total RNA-seq
1
MPRA
Assay category
80
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
Transcription
Target of assay
35
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
87
bam
71
fastq
52
bigWig
50
bed narrowPeak
50
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
2
tsv
1
txt
Organism
90
Homo sapiens
Biosample type
80
tissue
10
primary cell
1
cell line
Organ
67
pancreas
23
adipose tissue
23
connective tissue
10
epithelium
Project
88
AMP
3
HPAP
Genome assembly (visualization)
57
hg19
54
GRCh38
Lab
88
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent control read length
month_released!
June, 2019
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
MPRA
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
6
+ See 1 more…
primary cell
pancreatic acinar cell
1
1
2
pancreatic alpha cell
2
1
pancreatic beta cell
2
1
cell line
MIN6
1
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