Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
39
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
182
Transcription
DNA binding
39
DNA accessibility
1
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
191
bam
185
bigWig
173
tsv
18
bed narrowPeak
5
bigBed narrowPeak
5
fastq
2
bed bed3+
Organism
239
Homo sapiens
Biosample type
90
primary cell
89
in vitro differentiated cells
40
tissue
20
cell line
Organ
62
pancreas
27
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
171
AMP
68
T1D
Genome assembly (visualization)
198
hg19
191
GRCh38
Lab
158
AMP-T2D consortium
81
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
239 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
+ See 14 more…
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
See all biosamples
Download