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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
43
single cell RNA-seq
6
total RNA-seq
5
ATAC-seq
Assay category
412
DNA binding
49
Transcription
5
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
77
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
452
bam
388
bigWig
379
fastq
318
bed narrowPeak
317
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
49
tsv
3
tar
2
bed bed3+
Organism
466
Homo sapiens
Biosample type
315
cell line
94
tissue
57
primary cell
Organ
315
liver
91
brain
50
pancreas
44
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
466
AMP
Genome assembly (visualization)
337
hg19
336
GRCh38
Lab
466
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
August, 2020
BIOSAMPLE
ASSAY
466 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
pancreatic acinar cell
6
1
pancreatic delta cell
7
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 8 more…
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