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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
171
ChIP-seq
43
single cell RNA-seq
39
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
231
Transcription
171
DNA binding
39
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
357
bigWig
337
bam
222
tsv
138
bed narrowPeak
90
tagAlign
55
fastq
5
bigBed narrowPeak
4
bed bed3+
Organism
459
Homo sapiens
Biosample type
254
primary cell
132
in vitro differentiated cells
52
tissue
21
cell line
Organ
111
pancreas
64
epithelium
4
connective tissue
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
306
AMP
153
T1D
Genome assembly (visualization)
372
hg19
332
GRCh38
Lab
235
Kyle Gaulton, UCSD
224
AMP-T2D consortium
Audit category:
90
inconsistent ontology term
BIOSAMPLE
ASSAY
459 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
pancreatic acinar cell
6
1
pancreatic delta cell
7
pancreatic ductal cell
6
+ See 21 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
42
6
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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