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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
15
total RNA-seq
5
ATAC-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
30
DNA binding
18
Transcription
5
DNA accessibility
Target of assay
16
histone
16
histone modification
14
control
8
broad histone mark
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
54
fastq
53
bam
39
bigWig
21
bed narrowPeak
18
tsv
5
bigBed narrowPeak
2
bed bed3+
1
bedpe bed3+
Organism
54
Homo sapiens
Biosample type
40
in vitro differentiated cells
8
primary cell
6
tissue
Organ
14
pancreas
13
embryo
8
epithelium
1
adipose tissue
1
connective tissue
Project
54
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
54
AMP-T2D consortium
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 3 more…
primary cell
pancreatic alpha cell
2
2
pancreatic acinar cell
1
1
pancreatic beta cell
2
tissue
islet of Langerhans
6
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