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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
14
ChIP-seq
10
MeRIP-seq
6
ATAC-seq
1
DNase-seq
Assay category
19
Transcription
14
DNA binding
7
DNA accessibility
Target of assay
19
control
16
histone
histone modification
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
40
bam
34
fastq
25
bigWig
19
tsv
7
bed narrowPeak
6
bigBed narrowPeak
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
50
Homo sapiens
Biosample type
23
in vitro differentiated cells
11
primary cell
10
tissue
6
cell line
Organ
21
pancreas
11
epithelium
7
embryo
6
connective tissue
Project
50
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
40
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
50 results
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Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
4
3
definitive endodermal cell
2
1
embryonic stem cell
2
1
endocrine cell
2
1
posterior foregut
2
1
+ See 2 more…
primary cell
osteoblast
4
1
1
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
tissue
islet of Langerhans
6
4
cell line
EndoC_BH1
6
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