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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
WGBS
11
ATAC-seq
8
Hi-C
6
ChIP-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
15
DNA methylation
13
DNA accessibility
8
3D chromatin structure
6
DNA binding
Target of assay
9
control
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bam
82
bigWig
65
tsv
15
bed bedMethyl
15
bigBed bedMethyl
12
bed narrowPeak
11
fastq
7
bigBed narrowPeak
6
bed bed3+
4
hdf5
Organism
107
Homo sapiens
Biosample type
71
tissue
36
primary cell
Organ
18
brain
18
connective tissue
18
epithelium
17
heart
17
pancreas
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
9
liver
9
musculature of body
4
limb
3
artery
2
pericardium
1
eye
Project
107
AMP
Genome assembly (visualization)
98
hg19
78
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
ChIP-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
1
6
heart left ventricle
2
1
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 23 more…
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