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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
11
ATAC-seq
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
126
DNA binding
65
Transcription
27
DNA methylation
13
DNA accessibility
8
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
213
bam
187
bigWig
109
bed narrowPeak
104
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
11
fastq
6
bed bed3+
4
hdf5
Organism
239
Homo sapiens
Biosample type
198
tissue
41
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
23
epithelium
19
pancreas
18
connective tissue
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
2
pericardium
1
eye
Project
239
AMP
Genome assembly (visualization)
195
hg19
182
GRCh38
Lab
239
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
239 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 28 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 23 more…
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