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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
total RNA-seq
40
ChIP-seq
5
ATAC-seq
1
pCHi-C
Assay category
86
Transcription
40
DNA binding
5
DNA accessibility
Target of assay
20
histone
20
histone modification
15
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
641
February, 2021
397
November, 2017
311
August, 2021
262
October, 2019
205
August, 2017
194
May, 2020
159
June, 2019
132
May, 2021
113
May, 2019
98
February, 2023
94
December, 2017
80
April, 2019
80
November, 2018
71
July, 2019
49
March, 2020
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2018
6
November, 2019
5
December, 2019
4
March, 2023
1
August, 2018
1
October, 2022
0
September, 2017
Available data
89
bigWig
84
bam
81
tsv
3
bed narrowPeak
3
tagAlign
Organism
132
Homo sapiens
Biosample type
primary cell
129
in vitro differentiated cells
3
tissue
Organ
pancreas
26
epithelium
3
heart
2
embryo
1
connective tissue
1
thymus
Project
131
AMP
1
T1D
Genome assembly (visualization)
89
hg19
84
GRCh38
Lab
84
AMP-T2D consortium
48
Kyle Gaulton, UCSD
Audit category:
68
inconsistent ontology term
organ_slims!
pancreas
biosample_type!
primary cell
BIOSAMPLE
ASSAY
132 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
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tissue
cardiac atrium
1
cardiac ventricle
1
thymus
1
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