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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
660
total RNA-seq
169
ChIP-seq
84
RNA microarray
40
ATAC-seq
27
snATAC-seq
19
pCHi-C
18
single cell RNA-seq
3
snDrop-seq
1
DNAme array
Assay category
678
Transcription
169
DNA binding
67
DNA accessibility
1
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
20
transcription factor
11
control
5
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
0
September, 2017
Available data
785
bigWig
779
bam
660
tsv
153
bed narrowPeak
95
tagAlign
89
txt
39
fastq
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
Organism
1021
Homo sapiens
Biosample type
548
tissue
248
primary cell
155
in vitro differentiated cells
70
cell line
Organ
457
connective tissue
386
adipose tissue
151
bone element
pancreas
69
heart
66
artery
66
blood vessel
66
vasculature
63
epithelium
8
kidney
8
skeleton
6
limb
3
liver
2
embryo
1
bone marrow
1
thymus
Project
830
AMP
152
T1D
39
HPAP
Genome assembly (visualization)
821
hg19
775
GRCh38
Lab
748
AMP-T2D consortium
234
Kyle Gaulton, UCSD
39
Klaus Kaestner, Upenn
Audit category:
171
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1021 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
snDrop-seq
DNAme array
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 16 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
osteoblast
1
1
1
+ See 13 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
1
1
iPSC derived cell line
2
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