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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
19
total RNA-seq
10
MeRIP-seq
6
ATAC-seq
1
DNase-seq
Assay category
30
DNA binding
19
Transcription
7
DNA accessibility
Target of assay
19
control
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
56
bam
50
fastq
41
bigWig
23
bed narrowPeak
19
tsv
6
bigBed narrowPeak
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
66
Homo sapiens
Biosample type
39
in vitro differentiated cells
11
primary cell
10
tissue
6
cell line
Organ
21
pancreas
13
embryo
11
epithelium
6
connective tissue
Project
66
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
56
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
July, 2019
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
primary cell
osteoblast
4
1
1
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
tissue
islet of Langerhans
6
4
cell line
EndoC_BH1
6
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