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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
106
ATAC-seq
56
ChIP-seq
16
snATAC-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
194
Transcription
123
DNA accessibility
56
DNA binding
Target of assay
34
control
27
histone
27
histone modification
27
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
270
bigWig
193
tsv
50
tagAlign
34
bed narrowPeak
11
fastq
6
bigBed narrowPeak
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
384
Homo sapiens
Biosample type
211
tissue
166
primary cell
7
cell line
Organ
194
liver
29
pancreas
11
epithelium
8
blood
8
bodily fluid
6
connective tissue
Project
323
AMP
61
T1D
Genome assembly (visualization)
273
hg19
220
GRCh38
Lab
313
AMP-T2D consortium
61
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
BIOSAMPLE
ASSAY
384 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
DNase-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
6
4
4
pancreas
4
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
peripheral blood mononuclear cell
8
osteoblast
4
1
1
+ See 29 more…
cell line
EndoC_BH1
6
HepG2
1
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