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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
80
ChIP-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
22
snATAC-seq
Assay category
104
DNA accessibility
80
DNA binding
62
Transcription
41
DNA methylation
Target of assay
35
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
111
bam
95
fastq
88
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
7
txt
3
bed bed3+
2
tsv
Organism
287
Homo sapiens
Biosample type
146
tissue
141
primary cell
Organ
168
pancreas
87
epithelium
40
liver
23
adipose tissue
23
connective tissue
2
musculature of body
Project
153
AMP
134
HPAP
Genome assembly (visualization)
93
hg19
54
GRCh38
Lab
134
Klaus Kaestner, Upenn
89
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
body of pancreas
33
islet of Langerhans
18
6
6
endocrine pancreas
16
subcutaneous adipose tissue
12
+ See 3 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
24
25
pancreatic beta cell
15
16
pancreatic acinar cell
5
2
See all biosamples
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