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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
26
total RNA-seq
7
WGBS
2
single cell RNA-seq
Assay category
102
DNA binding
28
Transcription
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
137
fastq
135
bam
128
bigWig
95
bed narrowPeak
63
bigBed narrowPeak
26
tsv
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
137
Homo sapiens
Biosample type
61
cell line
60
primary cell
16
tissue
Organ
62
pancreas
50
liver
47
epithelium
15
blood
15
bodily fluid
8
spleen
Project
137
AMP
Genome assembly (visualization)
128
GRCh38
119
hg19
Lab
137
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
137 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic ductal cell
13
4
pancreatic endocrine cell
11
pancreatic acinar cell
8
2
pancreatic alpha cell
10
pancreatic beta cell
10
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tissue
spleen
6
2
liver
4
body of pancreas
2
pancreas
2
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