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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ATAC-seq
2
FAIRE-seq
Assay category
274
Transcription
197
DNA binding
56
DNA accessibility
28
DNA methylation
8
3D chromatin structure
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
35
bam
34
bed narrowPeak
27
bigWig
16
bigBed narrowPeak
14
fastq
Organism
56
Homo sapiens
Biosample type
27
primary cell
16
cell line
8
tissue
5
in vitro differentiated cells
Organ
30
epithelium
30
pancreas
4
heart
2
blood vessel
2
brain
2
vasculature
1
artery
1
kidney
Project
56
AMP
Genome assembly (visualization)
39
hg19
33
GRCh38
Lab
51
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
FAIRE-seq
primary cell
monocyte
13
pancreatic beta cell
4
pancreatic ductal cell
4
pancreatic acinar cell
3
pancreatic alpha cell
3
cell line
EndoC_BH1
16
tissue
heart left ventricle
2
coronary artery
1
frontal cortex
1
kidney
1
posterior cingulate cortex
1
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in vitro differentiated cells
embryonic stem cell
5
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