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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
41
total RNA-seq
26
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
61
DNA binding
41
Transcription
26
DNA accessibility
2
3D chromatin structure
Target of assay
50
histone
50
histone modification
26
narrow histone mark
24
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
118
bigWig
112
bam
87
bed narrowPeak
72
fastq
41
tsv
15
tagAlign
14
bigBed narrowPeak
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
132
Homo sapiens
Biosample type
75
primary cell
33
in vitro differentiated cells
23
cell line
1
tissue
Organ
72
pancreas
64
epithelium
18
liver
8
embryo
4
connective tissue
1
kidney
Project
132
AMP
Genome assembly (visualization)
177
GRCh38
132
hg19
Lab
112
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
12
7
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
tissue
kidney
1
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