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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
26
total RNA-seq
17
ATAC-seq
2
DNase-seq
1
RRBS
1
single cell RNA-seq
Assay category
85
DNA binding
27
Transcription
19
DNA accessibility
1
DNA methylation
Target of assay
70
histone
70
histone modification
37
narrow histone mark
33
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
131
fastq
130
bam
118
bigWig
79
bed narrowPeak
33
bigBed narrowPeak
26
tsv
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
132
Homo sapiens
Biosample type
284
tissue
132
primary cell
68
in vitro differentiated cells
Organ
113
pancreas
90
epithelium
Project
132
AMP
Genome assembly (visualization)
119
hg19
114
GRCh38
Lab
132
AMP-T2D consortium
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
primary cell
pancreatic beta cell
13
10
5
pancreatic alpha cell
13
10
4
pancreatic endocrine cell
23
pancreatic ductal cell
13
4
4
skeletal muscle myoblast
15
2
1
pancreatic acinar cell
8
2
4
pancreatic cell
1
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