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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
1
ATAC-seq
Assay category
92
Transcription
27
DNA methylation
8
3D chromatin structure
1
DNA accessibility
Target of assay
3
control
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
157
bigWig
154
bam
91
tsv
73
fastq
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
128
Homo sapiens
Biosample type
70
tissue
58
primary cell
Organ
39
epithelium
32
pancreas
21
heart
18
connective tissue
17
brain
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
128
AMP
Genome assembly (visualization)
110
hg19
100
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
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primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
4
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
+ See 25 more…
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