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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
18
small RNA-seq
9
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
91
Transcription
32
DNA binding
22
DNA accessibility
9
DNA methylation
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
157
bigWig
154
bam
91
tsv
73
fastq
53
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
154
Homo sapiens
Biosample type
90
primary cell
64
tissue
Organ
76
pancreas
66
epithelium
21
heart
16
connective tissue
13
brain
12
adipose tissue
9
blood vessel
9
vasculature
7
kidney
7
liver
5
musculature of body
3
artery
1
limb
1
pericardium
Project
154
AMP
Genome assembly (visualization)
151
GRCh38
144
hg19
Lab
154
AMP-T2D consortium
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 15 more…
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 21 more…
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