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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
19
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
32
DNA binding
24
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
12
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
360
fastq
354
bam
344
bigWig
188
bed narrowPeak
115
tsv
85
tagAlign
56
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
50
Homo sapiens
Biosample type
33
primary cell
22
tissue
1
in vitro differentiated cells
Organ
31
pancreas
17
epithelium
6
liver
3
connective tissue
2
adipose tissue
Project
56
AMP
Genome assembly (visualization)
56
hg19
52
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
5
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic ductal cell
4
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
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in vitro differentiated cells
adipocyte
1
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