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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
total RNA-seq
23
single cell RNA-seq
17
ATAC-seq
Assay category
70
Transcription
57
DNA binding
17
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
control
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
144
fastq
102
bam
101
bigWig
67
bed narrowPeak
35
bigBed narrowPeak
31
tsv
19
zippedFastqFolder
1
csv
Organism
144
Homo sapiens
Biosample type
114
primary cell
23
cell line
7
tissue
Organ
91
pancreas
80
epithelium
18
blood
18
bodily fluid
7
spleen
5
liver
Project
103
AMP
41
HPAP
Genome assembly (visualization)
101
GRCh38
98
hg19
Lab
103
AMP-T2D consortium
41
Klaus Kaestner, Upenn
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
144 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
25
5
Langerhans cell
22
pancreatic ductal cell
13
4
4
pancreatic beta cell
11
5
pancreatic acinar cell
8
2
3
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cell line
GM12878
18
HepG2
5
tissue
spleen
7
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