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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
31
total RNA-seq
14
ATAC-seq
10
single cell RNA-seq
10
snATAC-seq
Assay category
57
DNA binding
41
Transcription
24
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
103
fastq
102
bam
98
bigWig
67
bed narrowPeak
35
bigBed narrowPeak
31
tsv
1
csv
Organism
121
Homo sapiens
Biosample type
73
primary cell
26
tissue
23
cell line
Organ
72
pancreas
61
epithelium
19
lung
18
blood
18
bodily fluid
7
spleen
5
liver
Project
103
AMP
19
LungMap
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
103
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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tissue
lung
9
10
spleen
7
cell line
GM12878
18
HepG2
5
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