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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
26
total RNA-seq
1
Hi-C
1
single cell RNA-seq
Assay category
66
DNA binding
27
Transcription
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
94
fastq
92
bam
88
bigWig
62
bed narrowPeak
30
bigBed narrowPeak
26
tsv
1
csv
Organism
94
Homo sapiens
Biosample type
59
primary cell
28
cell line
7
tissue
Organ
58
pancreas
47
epithelium
27
blood
27
bodily fluid
7
spleen
1
liver
Project
94
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
32
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
pancreatic endocrine cell
11
pancreatic acinar cell
8
2
pancreatic alpha cell
10
pancreatic beta cell
10
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cell line
GM12878
27
HepG2
1
tissue
spleen
7
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