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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
66
ChIP-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
1
Hi-C
Assay category
113
DNA accessibility
87
Transcription
66
DNA binding
41
DNA methylation
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
132
fastq
130
bam
122
bigWig
114
bed narrowPeak
44
bigBed narrowPeak
26
tsv
7
txt
1
bed bed3+
1
csv
Organism
308
Homo sapiens
Biosample type
207
primary cell
73
tissue
28
cell line
Organ
176
pancreas
141
epithelium
41
liver
27
blood
27
bodily fluid
7
spleen
2
musculature of body
Project
174
AMP
134
HPAP
Genome assembly (visualization)
141
hg19
102
GRCh38
Lab
134
Klaus Kaestner, Upenn
110
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
308 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
4
13
4
pancreatic acinar cell
7
8
2
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
1
cell line
GM12878
27
HepG2
1
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