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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
32
ChIP-seq
26
ATAC-seq
1
single cell RNA-seq
Assay category
103
Transcription
32
DNA binding
26
DNA accessibility
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
149
fastq
72
bam
72
bigWig
46
bed narrowPeak
38
tsv
14
bigBed narrowPeak
1
csv
Organism
161
Homo sapiens
Biosample type
161
primary cell
95
tissue
16
in vitro differentiated cells
6
cell line
Organ
109
pancreas
98
epithelium
Project
85
AMP
76
HPAP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
85
AMP-T2D consortium
76
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
37
3
exocrine cell
39
pancreatic beta cell
20
4
pancreatic ductal cell
4
13
4
pancreatic acinar cell
2
8
3
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