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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
88
ChIP-seq
31
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
201
DNA accessibility
88
DNA binding
32
Transcription
Target of assay
58
histone
58
histone modification
29
broad histone mark
29
narrow histone mark
18
transcription factor
12
control
10
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
320
bam
308
bigWig
277
bed narrowPeak
245
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
103
fastq
31
tsv
1
csv
Organism
321
Homo sapiens
Biosample type
170
tissue
128
primary cell
23
cell line
Organ
81
epithelium
81
kidney
76
pancreas
43
musculature of body
35
heart
32
limb
30
brain
18
blood
18
bodily fluid
18
connective tissue
18
ureter
7
eye
7
liver
7
spleen
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
321
AMP
Genome assembly (visualization)
308
GRCh38
285
hg19
Lab
321
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
321 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 23 more…
cell line
GM12878
18
HepG2
5
See all biosamples
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