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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
total RNA-seq
32
ChIP-seq
18
ATAC-seq
18
small RNA-seq
15
RRBS
10
WGBS
6
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
87
Transcription
32
DNA binding
25
DNA methylation
20
DNA accessibility
6
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
147
bigWig
145
bam
86
tsv
73
fastq
51
bed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
16
bigBed narrowPeak
2
bed bed3+
2
hdf5
1
csv
Organism
170
Homo sapiens
Biosample type
100
primary cell
70
tissue
Organ
78
pancreas
74
epithelium
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
170
AMP
Genome assembly (visualization)
154
hg19
143
GRCh38
Lab
170
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
170 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 22 more…
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
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