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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
97
ChIP-seq
1
pCHi-C
Assay category
Transcription
122
DNA accessibility
97
DNA binding
Target of assay
71
histone
71
histone modification
44
narrow histone mark
27
broad histone mark
26
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
156
bam
132
bigWig
85
bed narrowPeak
64
tagAlign
63
fastq
20
bigBed narrowPeak
4
bed broadPeak
1
tsv
Organism
220
Homo sapiens
Biosample type
146
primary cell
73
tissue
1
cell line
Organ
51
liver
51
pancreas
35
epithelium
16
brain
1
adipose tissue
1
connective tissue
1
spleen
Project
220
AMP
Genome assembly (visualization)
131
hg19
79
GRCh38
Lab
219
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
36
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
220 results
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ATAC-seq
ChIP-seq
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic ductal cell
4
13
macrophage
11
pancreatic acinar cell
3
8
+ See 28 more…
tissue
liver
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 2 more…
cell line
HepG2
1
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