Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
total RNA-seq
121
ATAC-seq
82
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
172
Transcription
121
DNA accessibility
82
DNA binding
Target of assay
59
histone
59
histone modification
42
narrow histone mark
23
control
17
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
310
bam
294
bigWig
170
tsv
80
fastq
73
bed narrowPeak
50
tagAlign
14
bigBed narrowPeak
1
csv
Organism
376
Homo sapiens
Biosample type
193
tissue
182
primary cell
1
cell line
Organ
194
liver
79
pancreas
68
epithelium
Project
369
AMP
T1D
7
HPAP
Genome assembly (visualization)
287
hg19
241
GRCh38
Lab
369
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
32
missing controlled_by
award.project!
T1D
BIOSAMPLE
ASSAY
376 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic alpha cell
10
8
pancreatic beta cell
10
6
+ See 30 more…
cell line
HepG2
1
See all biosamples
Download