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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
114
ATAC-seq
82
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
217
Transcription
114
DNA accessibility
82
DNA binding
Target of assay
59
histone
59
histone modification
42
narrow histone mark
23
control
17
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
October, 2022
3
June, 2018
1
August, 2022
Available data
355
bam
332
bigWig
215
tsv
73
bed narrowPeak
73
fastq
50
tagAlign
14
bigBed narrowPeak
1
csv
Organism
414
Homo sapiens
Biosample type
220
primary cell
193
tissue
1
cell line
Organ
194
liver
72
pancreas
61
epithelium
Project
369
AMP
45
T1D
Genome assembly (visualization)
332
hg19
279
GRCh38
Lab
369
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
October, 2022
BIOSAMPLE
ASSAY
414 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic beta cell
10
4
pancreatic acinar cell
2
3
8
+ See 30 more…
tissue
liver
143
50
cell line
HepG2
1
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