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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
total RNA-seq
114
ATAC-seq
107
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
222
Transcription
114
DNA accessibility
107
DNA binding
Target of assay
66
histone
66
histone modification
45
narrow histone mark
27
control
21
broad histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
385
bam
358
bigWig
220
tsv
103
fastq
94
bed narrowPeak
50
tagAlign
35
bigBed narrowPeak
1
csv
Organism
444
Homo sapiens
Biosample type
220
primary cell
200
tissue
24
cell line
Organ
199
liver
72
pancreas
61
epithelium
18
blood
18
bodily fluid
7
spleen
Project
399
AMP
45
T1D
Genome assembly (visualization)
358
hg19
305
GRCh38
Lab
399
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
444 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic beta cell
10
4
pancreatic acinar cell
2
3
8
+ See 30 more…
tissue
liver
143
50
spleen
7
cell line
GM12878
18
HepG2
5
1
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