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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
186
DNase-seq
114
ATAC-seq
113
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
300
DNA accessibility
217
Transcription
113
DNA binding
Target of assay
78
histone
78
histone modification
53
narrow histone mark
31
control
25
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
572
bam
541
bigWig
282
bed narrowPeak
223
bigBed narrowPeak
215
tsv
186
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
73
fastq
50
tagAlign
1
csv
Organism
631
Homo sapiens
Biosample type
355
tissue
275
primary cell
1
cell line
Organ
196
liver
81
epithelium
81
kidney
76
pancreas
43
musculature of body
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
adipose tissue
Project
586
AMP
45
T1D
Genome assembly (visualization)
518
hg19
488
GRCh38
Lab
586
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
631 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic beta cell
10
4
pancreatic acinar cell
2
3
8
+ See 52 more…
cell line
HepG2
1
See all biosamples
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